The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR103
  5. bhi-miR103b

Accession: B11237942

Entry

ID: bhi-miR103b
Alias: F16365.N000032.A25
Sequence: AGCAGCAUUGUACAGGGCUAUGA
Description: mir-103/107 microRNA precursor predicted,partially
Species: 冬瓜  Species latin name: Benincasa hispida
TCM Name: Dongguapi(冬瓜皮)  
TCM Resource (Sample number): 冬瓜皮(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR103b; Bswzz-miR103a; acr-miR103a; asc-miR103a; bca-miR103a; bch-miR103a; bhi-miR103b; bpi-miR103a; cas-miR103a; cci-miR103a; cfe-miR103a; cid-miR103; cit-miR103c; cma-miR103; cmd-miR103b; cmj-miR103; cof-miR103b; cri-miR103; cso-miR103a; csp-miR103a; csu-miR103a; ehu-miR103; eja-miR103; epr-miR103; esn-miR103a; fmu-miR103a; fsu-miR103a; gel-miR103; gpe-miR103; hcr-miR103b; lba-miR103; lgr-miR103a; lji-miR103; ljn-miR103a; ljo-miR103; ljp-miR103a; lln-miR103; llu-miR103; mal-miR103; mpu-miR103a; nnu-miR103a; nte-miR103; pfr-miR103a; pgi-miR103; poe-miR103c; ppr-miR103a; pvl-miR103a; sar-miR103a; sbc-miR103; sch-miR103; sdf-miR103a; sdi-miR103a; sgi-miR103a; sln-miR103; sor-miR103d; tch-miR103a; tfa-miR103; tki-miR103a; tmo-miR103; vph-miR103a; zof-miR103a;

Rfam Alignments

>> mir-103  mir-103/107 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   21.0   0.0  cm       48       70 ~~           1          23 + ~~ 1.00 5'&3' 0.48
                                                               ???????????    ??   ??      NC
                                                        ~~~~~~_>>>>>>>>>>>---->>--->>~~~~~ CS
                                             mir-103  1 <[47]*AGCAgCAuUGUACAGGGCUAUgA*[8]> 78
                                                              AGCAGCAUUGUACAGGGCUAUGA
                                         zof-miR103a  1 <[ 0]*AGCAGCAUUGUACAGGGCUAUGA*[0]> 23
                                                        ......***********************..... PP

Targets

Predicted by TargetFinder

NM_001321454 ;   NM_001321458 ;   NM_002180 ;   NR_031721 ;   NR_031722 ;  

Predicted by TAPIR

NM_002180 ;   NR_031721 ;   NR_031722 ;