The Bencao (Herbal) Database(本草数据库)
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miRNA_Target(miRNA靶基因)
sRNA_Target(sRNA靶基因)
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OmicsAtlas
TranscriptomeAtlas
miRNA Atlas
lin
bhi-lin-4a
Accession:
B11113840
Entry
Homologs
Rfam Alignments
Targets
Entry
ID:
bhi-lin-4a
Alias:
F3081.L000011.A25
Sequence:
UCCCUGAGACCCUAACUUGUG
Description:
lin-4 microRNA precursor predicted,partially
Species:
冬瓜
  Species latin name:
Benincasa hispida
TCM Name:
Dongguapi(冬瓜皮)
TCM Resource (Sample number):
冬瓜皮(1)
Predicted by
Mirnovo
:
-
Evidence support:
Infernal
Experimental status:
Not yet
Homologs
miRBase Homologs
None
Bencao Homologs
Bjl-lin-4b
;
Bswzz-lin-4a
;
aar-lin-4a
;
acr-lin-4a
;
asc-lin-4b
;
bca-lin-4b
;
bch-lin-4b
;
bhi-lin-4a
;
bpi-lin-4b
;
cas-lin-4a
;
cba-lin-4a
;
cci-lin-4a
;
cfe-lin-4b
;
cit-lin-4b
;
cmd-lin-4b
;
cof-lin-4b
;
csp-lin-4b
;
ehu-lin-4
;
epr-lin-4a
;
esn-lin-4b
;
fmu-lin-4b
;
fsu-lin-4b
;
gel-lin-4a
;
hcr-lin-4b
;
lba-lin-4b
;
ljc-lin-4
;
lji-lin-4
;
ljn-lin-4a
;
ljo-lin-4b
;
ljp-lin-4b
;
llu-lin-4a
;
mal-lin-4a
;
nnu-lin-4a
;
pfr-lin-4b
;
poe-lin-4b
;
ppr-lin-4a
;
psu-lin-4
;
pvl-lin-4b
;
rcr-lin-4a
;
sar-lin-4a
;
sba-lin-4a
;
sdf-lin-4b
;
sgi-lin-4b
;
sor-lin-4b
;
tch-lin-4a
;
tfa-lin-4a
;
tki-lin-4b
;
vph-lin-4b
;
zof-lin-4b
;
Rfam Alignments
>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0028   20.0   0.0  cm        7       27 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                                              ??? ???? ??? ???????       NC
                                                        ~~~~~-<<<-<<<<-<<<-<<<<<<<~~~~~~ CS
                                               lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUG*[44]> 71
                                                             UCCCUGAGACCC AACUUGUG
                                          zof-lin-4b  1 <[0]*UCCCUGAGACCCUAACUUGUG*[ 0]> 21
                                                        .....*********************...... PP
Targets
Predicted by TargetFinder
NM_001005851
;  
NM_001079512
;  
NM_001257135
;  
NM_001318873
;  
NM_002309
;  
NM_006736
;  
NM_018196
;  
NR_103558
;  
Predicted by TAPIR
NM_001005851
;  
NM_001040273
;  
NM_001079512
;  
NM_001100599
;  
NM_001122957
;  
NM_001136046
;  
NM_001139498
;  
NM_001139500
;  
NM_001139501
;  
NM_001139502
;  
NM_001267822
;  
NM_001271926
;  
NM_001288805
;  
NM_001288807
;  
NM_001288808
;  
NM_001288809
;  
NM_001318873
;  
NM_004114
;  
NM_005881
;  
NM_018196
;  
NM_032265
;  
NM_033642
;  
NM_173555
;  
NM_173831
;  
NR_073580
;  
NR_073581
;  
NR_073582
;  
NR_073591
;  
NR_073592
;  
NR_073593
;  
NR_073594
;  
NR_073595
;  
NR_103558
;  
NR_108100
;  
NR_110190
;  
NR_110191
;  
NR_110192
;  
NR_110193
;  
NR_148221
;