The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. cmd-lin-4j

Accession: B19295398

Entry

ID: cmd-lin-4j
Alias: F44011.M000049.A25*
Sequence: UCCCUGAGACCCUAACUUGUGA
Description: lin-4 microRNA precursor predicted,partially
Species: 香橼  Species latin name: Citrus medica
TCM Name: Foshou(佛手)   Zhiqiao(枳壳)   Zhishi(枳实)   Xiangyuan(香橼)  
TCM Resource (Sample number): 佛手(1) 枳壳(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-lin-4g; Bswzz-lin-4d; aar-lin-4b; acr-lin-4d; apa-lin-4; asc-lin-4e; bca-lin-4d; bch-lin-4e; bhi-lin-4b; bpi-lin-4d; cas-lin-4b; cba-lin-4b; cci-lin-4e; cfe-lin-4g; cit-lin-4t; cmd-lin-4j; cmj-lin-4; cmo-lin-4; cof-lin-4f; csp-lin-4e; csu-lin-4b; cya-lin-4; eja-lin-4; epr-lin-4b; esn-lin-4c; fmu-lin-4d; fsu-lin-4h; gel-lin-4c; hcr-lin-4i; lba-lin-4c; lch-lin-4; lgr-lin-4; ljn-lin-4b; ljo-lin-4e; ljp-lin-4e; llu-lin-4c; mal-lin-4b; nnu-lin-4b; nte-lin-4; pfr-lin-4d; poe-lin-4n; ppr-lin-4c; pvl-lin-4h; rcr-lin-4b; sar-lin-4d; sba-lin-4b; sbc-lin-4; sch-lin-4c; sdf-lin-4f; sgi-lin-4d; sln-lin-4b; sor-lin-4u; sto-lin-4; tch-lin-4e; tfa-lin-4c; tki-lin-4g; tmo-lin-4; vph-lin-4d; zof-lin-4f;

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0012   21.3   0.0  cm        7       28 ~~           1          22 + ~~ 1.00 5'&3' 0.50
                                                                 ??? ???? ??? ????????       NC
                                                           ~~~~~-<<<-<<<<-<<<-<<<<<<<<~~~~~~ CS
                                                  lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUGA*[43]> 71
                                                                UCCCUGAGACCC AACUUGUGA
                                             zof-lin-4f  1 <[0]*UCCCUGAGACCCUAACUUGUGA*[ 0]> 22
                                                           .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001005851 ;   NM_001257135 ;   NM_002309 ;  

Predicted by TAPIR

NM_001005851 ;   NR_033962 ;   NR_108100 ;