The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. cit-lin-4n

Accession: B16607244

Entry

ID: cit-lin-4n
Alias: F18150.M000078.A11
Sequence: UCCCUGAGACCCUAACCUGUGG
Description: lin-4 microRNA precursor predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

None

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.005   19.2   0.0  cm        7       28 ~~           1          22 + ~~ 1.00 5'&3' 0.59
                               ??? ???? ??? ????????       NC
                         ~~~~~-<<<-<<<<-<<<-<<<<<<<<~~~~~~ CS
                lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUGA*[43]> 71
                              UCCCUGAGACCC AAC UGUG
           cit-lin-4n  1 <[0]*UCCCUGAGACCCUAACCUGUGG*[ 0]> 22
                         .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001040273 ;   NM_001257135 ;   NM_002309 ;   NM_018196 ;   NM_173555 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;  

Predicted by TAPIR

NM_001040273 ;   NM_173555 ;   NR_033962 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;   NR_108100 ;