The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. cit-lin-4j

Accession: B16607222

Entry

ID: cit-lin-4j
Alias: F18150.L000025.A11
Sequence: UCCCUGAGACCCAAACUUGUG
Description: lin-4 microRNA precursor predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

None

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?      0.01   18.0   0.0  cm        7       27 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                               ??? ???? ??? ???????       NC
                         ~~~~~-<<<-<<<<-<<<-<<<<<<<~~~~~~ CS
                lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUG*[44]> 71
                              UCCCUGAGACCC AACUUGUG
           cit-lin-4j  1 <[0]*UCCCUGAGACCCAAACUUGUG*[ 0]> 21
                         .....*********************...... PP

Targets

Predicted by TargetFinder

NM_001005851 ;   NM_001040273 ;   NM_001139498 ;   NM_001139500 ;   NM_001139501 ;   NM_001139502 ;   NM_001204869 ;   NM_001204870 ;   NM_001351702 ;   NM_001354250 ;   NM_001354251 ;   NM_003882 ;   NM_004114 ;   NM_022749 ;   NM_033642 ;   NM_080838 ;   NM_173555 ;   NM_178026 ;   NR_037944 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;   NR_148727 ;   NR_148728 ;   NR_148729 ;   NR_148730 ;   NR_148731 ;  

Predicted by TAPIR

NM_001005851 ;   NM_001040273 ;   NM_001079512 ;   NM_001100599 ;   NM_001122957 ;   NM_001139498 ;   NM_001139500 ;   NM_001139501 ;   NM_001139502 ;   NM_001204869 ;   NM_001204870 ;   NM_001271926 ;   NM_001288805 ;   NM_001288807 ;   NM_001288808 ;   NM_001288809 ;   NM_001318873 ;   NM_003882 ;   NM_004114 ;   NM_005881 ;   NM_033642 ;   NM_080838 ;   NM_173555 ;   NM_173831 ;   NR_037944 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;   NR_103558 ;   NR_108100 ;   NR_110190 ;   NR_110191 ;   NR_110192 ;   NR_110193 ;   NR_148221 ;