The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. abi-miR319

Accession: B00472904

Entry

ID: abi-miR319
Alias: F47.J000004.A3D
Sequence: UUGGACUGAAGGGAGCUCC
Description: MIR319 putative
Species: 牛膝  Species latin name: Achyranthes bidentata
TCM Name: Niuxi(牛膝)  
TCM Resource (Sample number): 牛膝(2)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

pta-miR319;

Bencao Homologs

aan-miR319b; abi-miR319; acr-miR319a; aeu-miR319a; aha-miR319b; ala-miR319b; aof-miR319c; apl-miR319c; ave-miR319a; bca-miR319b; bch-miR319b; bmj-miR319c; cas-miR319a; cco-miR319d; ccs-miR319c; cga-miR319; clo-miR319a; cmo-miR319b; cof-miR319b; cpi-miR319a; csm-miR319b; csu-miR319; dst-miR319b; ehu-miR319b; epr-miR319b; est-miR319c; gbi-miR319a; gma-miR319c; gmc-miR319b; gpe-miR319b; hcr-miR319b; hof-miR319b; ija-miR319b; ili-miR319b; ini-miR319a; kga-miR319a; ljn-miR319b; llc-miR319a; lpu-miR319a; mca-miR319c; mch-miR319a; nca-miR319; nja-miR319a; nnu-miR319d; nsc-miR319a; nte-miR319a; pas-miR319b; pav-miR319c; pcn-miR319a; pfr-miR319b; por-miR319c; psu-miR319b; pvl-miR319b; rch-miR319b; rcr-miR319c; rja-miR319c; sba-miR319b; sbc-miR319c; sgl-miR319c; smi-miR319b; smn-miR319a; ssu-miR319c; tch-miR319a; tci-miR319a; twi-miR319b; vof-miR319b; vum-miR319a; zof-miR319c;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   19.4   0.0  cm      165      183 ~~           1          19 + ~~ 1.00 5'&3' 0.58
                                                                  ???????  ????????        NC
                                                          ~~~~~~~->>>>>>>-->>>>>>>>:~~~~~~ CS
                                               MIR159   1 <[164]*UUGGAcuGAAGGGAGCUCC*[13]> 196
                                                                 UUGGACUGAAGGGAGCUCC
                                          zof-miR319c   1 <[  0]*UUGGACUGAAGGGAGCUCC*[ 0]> 19
                                                          .......*******************...... PP

Targets

Predicted by TargetFinder

NM_001010915 ;   NM_001047160 ;   NM_001123364 ;   NM_001134774 ;   NM_001134775 ;   NM_001134776 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001171740 ;   NM_001171741 ;   NM_001256850 ;   NM_001267550 ;   NM_001276418 ;   NM_001278683 ;   NM_001278685 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001300860 ;   NM_001307985 ;   NM_001318734 ;   NM_001321265 ;   NM_001321266 ;   NM_001321267 ;   NM_001321883 ;   NM_001321903 ;   NM_001321920 ;   NM_001321922 ;   NM_001321923 ;   NM_001354594 ;   NM_001354595 ;   NM_001363943 ;   NM_001364689 ;   NM_001364690 ;   NM_003076 ;   NM_003319 ;   NM_003853 ;   NM_005445 ;   NM_005863 ;   NM_012465 ;   NM_014829 ;   NM_014866 ;   NM_014906 ;   NM_015603 ;   NM_016201 ;   NM_016210 ;   NM_018484 ;   NM_020447 ;   NM_022781 ;   NM_022822 ;   NM_022895 ;   NM_024546 ;   NM_032862 ;   NM_033208 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_138799 ;   NM_139071 ;   NM_152599 ;   NM_173626 ;   NM_173808 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_003682 ;   NR_029401 ;   NR_033908 ;   NR_048561 ;   NR_073040 ;   NR_073404 ;   NR_104409 ;   NR_105002 ;   NR_110763 ;   NR_125341 ;   NR_132119 ;   NR_135112 ;   NR_135598 ;   NR_135599 ;   NR_135600 ;   NR_135603 ;   NR_135604 ;   NR_135605 ;   NR_135841 ;   NR_135842 ;   NR_135843 ;   NR_135844 ;   NR_135845 ;   NR_135846 ;   NR_135847 ;   NR_135848 ;   NR_135849 ;   NR_135850 ;   NR_135851 ;   NR_135852 ;   NR_135853 ;   NR_135854 ;   NR_157803 ;   NR_157804 ;  

Predicted by TAPIR

NM_000524 ;   NM_001001852 ;   NM_001010915 ;   NM_001024215 ;   NM_001047160 ;   NM_001166269 ;   NM_001166270 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001171740 ;   NM_001171741 ;   NM_001174071 ;   NM_001174072 ;   NM_001256850 ;   NM_001267550 ;   NM_001278683 ;   NM_001278685 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_001350151 ;   NM_001363943 ;   NM_001364689 ;   NM_001364690 ;   NM_001371328 ;   NM_003076 ;   NM_003319 ;   NM_003853 ;   NM_005863 ;   NM_012465 ;   NM_014829 ;   NM_014906 ;   NM_015603 ;   NM_016201 ;   NM_016210 ;   NM_017556 ;   NM_017815 ;   NM_022781 ;   NM_022895 ;   NM_024630 ;   NM_031287 ;   NM_032862 ;   NM_033071 ;   NM_033208 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_139071 ;   NM_152599 ;   NM_173626 ;   NM_173808 ;   NM_178276 ;   NM_182961 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_003682 ;   NR_024042 ;   NR_029401 ;   NR_033908 ;   NR_048561 ;   NR_073040 ;   NR_073404 ;   NR_104409 ;   NR_105002 ;   NR_110763 ;   NR_125341 ;   NR_126060 ;   NR_126061 ;   NR_132119 ;   NR_135112 ;   NR_157803 ;   NR_157804 ;