The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR167
  5. apl-miR167k

Accession: B07926454

Entry

ID: apl-miR167k
Alias: F42663.K000023.A25*
Sequence: UGAAGCUGUCAGCAUGAUCU
Description: microRNA MIR167_1 predicted
Species: 龙牙草  Species latin name: Agrimonia pilosa
TCM Name: Xianhecao(仙鹤草)  
TCM Resource (Sample number): 仙鹤草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR167g; apl-miR167k; cco-miR167j; gbi-miR167i; lpu-miR167i; nnu-miR167l; tci-miR167g;

Rfam Alignments

>> MIR167_1  microRNA MIR167_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0032   19.0   0.0  cm       14       33 ~~           1          20 + ~~ 1.00 5'&3' 0.45
                                                             ??? ?????  ?????????       NC
                                                       ~~~~~~<<<-<<<<<--<<<<<<<<<~~~~~~ CS
                                           MIR167_1  1 <[13]*UGAAGCUGCCAGCAUGAuCU*[97]> 130
                                                             UGAAGCUG CAGCAUGAUCU
                                        tci-miR167g  1 <[ 0]*UGAAGCUGUCAGCAUGAUCU*[ 0]> 20
                                                       ......********************...... PP

Targets

Predicted by TargetFinder

NM_001145642 ;   NM_001159770 ;   NM_001164757 ;   NM_001166131 ;   NM_001205301 ;   NM_001282948 ;   NM_001291623 ;   NM_001291624 ;   NM_001291625 ;   NM_001297669 ;   NM_001297670 ;   NM_001297671 ;   NM_001297672 ;   NM_001303107 ;   NM_001303108 ;   NM_001307960 ;   NM_001308026 ;   NM_001318153 ;   NM_001318154 ;   NM_001321538 ;   NM_001321539 ;   NM_001322252 ;   NM_001322254 ;   NM_001322258 ;   NM_001346873 ;   NM_001352691 ;   NM_001352692 ;   NM_001352693 ;   NM_001353684 ;   NM_001353685 ;   NM_001353686 ;   NM_001353687 ;   NM_001353688 ;   NM_001353689 ;   NM_001353690 ;   NM_001353691 ;   NM_001353692 ;   NM_001353693 ;   NM_001353694 ;   NM_001370528 ;   NM_001371233 ;   NM_001918 ;   NM_002077 ;   NM_002547 ;   NM_002809 ;   NM_003253 ;   NM_004297 ;   NM_005198 ;   NM_014687 ;   NM_014697 ;   NM_015149 ;   NM_022755 ;   NM_025108 ;   NM_025141 ;   NM_032342 ;   NM_032776 ;   NM_078474 ;   NM_139177 ;   NM_152403 ;   NM_152463 ;   NM_170742 ;   NM_172364 ;   NM_182798 ;   NM_198859 ;   NM_199280 ;   NR_002710 ;   NR_027928 ;   NR_028408 ;   NR_028508 ;   NR_038253 ;   NR_038254 ;   NR_038255 ;   NR_038325 ;   NR_038326 ;   NR_103809 ;   NR_110089 ;   NR_120371 ;   NR_120453 ;   NR_120673 ;   NR_121624 ;   NR_134512 ;  

Predicted by TAPIR

NM_001159387 ;   NM_001159388 ;   NM_001159770 ;   NM_001166131 ;   NM_001178005 ;   NM_001242412 ;   NM_001256850 ;   NM_001267045 ;   NM_001270584 ;   NM_001270585 ;   NM_001282782 ;   NM_001282785 ;   NM_001291623 ;   NM_001291624 ;   NM_001291625 ;   NM_001297669 ;   NM_001297670 ;   NM_001297671 ;   NM_001297672 ;   NM_001303107 ;   NM_001303108 ;   NM_001307960 ;   NM_001308026 ;   NM_001321538 ;   NM_001321539 ;   NM_001321981 ;   NM_001323906 ;   NM_001323907 ;   NM_001323908 ;   NM_001323909 ;   NM_001323910 ;   NM_001323911 ;   NM_001323912 ;   NM_001323913 ;   NM_001330332 ;   NM_001351360 ;   NM_001352691 ;   NM_001352692 ;   NM_001352693 ;   NM_001370528 ;   NM_001371233 ;   NM_001371910 ;   NM_001371911 ;   NM_002077 ;   NM_002547 ;   NM_002809 ;   NM_004297 ;   NM_006609 ;   NM_014737 ;   NM_015149 ;   NM_017614 ;   NM_018006 ;   NM_020731 ;   NM_020880 ;   NM_021629 ;   NM_022755 ;   NM_024726 ;   NM_025108 ;   NM_025141 ;   NM_078474 ;   NM_133378 ;   NM_139177 ;   NM_144618 ;   NM_152463 ;   NM_153446 ;   NM_170742 ;   NM_170774 ;   NM_172364 ;   NM_198859 ;   NM_198993 ;   NM_199280 ;   NR_002710 ;   NR_028408 ;   NR_028508 ;   NR_038253 ;   NR_038254 ;   NR_038255 ;   NR_073043 ;   NR_103809 ;   NR_110089 ;   NR_120371 ;   NR_120453 ;   NR_120673 ;   NR_159481 ;