The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. apl-miR319f

Accession: B07665599

Entry

ID: apl-miR319f
Alias: F230.L000029.A3D
Sequence: CUUGGACUGAAGGGAGCUCCU
Description: MIR319 putative
Species: 龙牙草  Species latin name: Agrimonia pilosa
TCM Name: Xianhecao(仙鹤草)  
TCM Resource (Sample number): 仙鹤草(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

mes-miR319h; vun-miR319b;

Bencao Homologs

apl-miR319f; bca-miR319e; est-miR319e; gmc-miR319f; hof-miR319e;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   19.6   0.0  cm      164      184 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                                                                      ???????  ????????         NC
                                                             ~~~~~~~-->>>>>>>-->>>>>>>>::~~~~~~ CS
                                                  MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCCu*[12]> 196
                                                                     UUGGACUGAAGGGAGCUCCU
                                             hof-miR319e   1 <[  0]*CUUGGACUGAAGGGAGCUCCU*[ 0]> 21
                                                             .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001042450 ;   NM_001171740 ;   NM_001171741 ;   NM_001270648 ;   NM_001276418 ;   NM_014866 ;   NM_014906 ;   NM_016210 ;   NM_152351 ;   NM_173808 ;   NR_048561 ;  

Predicted by TAPIR

NM_001114093 ;   NM_001171740 ;   NM_001171741 ;   NM_001276418 ;   NM_014866 ;   NM_015578 ;   NM_016210 ;   NM_173808 ;