The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR396
  5. apl-miR396b

Accession: B07547871

Entry

ID: apl-miR396b
Alias: F5.L000064.A3D
Sequence: UUCCACAGCUUUCUUGAACUU
Description: MIR396 putative
Species: 龙牙草  Species latin name: Agrimonia pilosa
TCM Name: Xianhecao(仙鹤草)  
TCM Resource (Sample number): 仙鹤草(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR396b-5p; ama-miR396-5p; aqc-miR396b; ata-miR396c-5p; ath-miR396b-5p; atr-miR396b; atr-miR396c; atr-miR396e; bcy-miR396b; bdi-miR396e-5p; bgy-miR396b; bna-miR396a; bra-miR396-5p; cas-miR396b; cca-miR396a-5p; ccl-miR396; cme-miR396a; cme-miR396c; cme-miR396d; csi-miR396f-5p; fve-miR396b-5p; gma-miR396b-5p; gma-miR396c; gma-miR396k-5p; lus-miR396b; lus-miR396e; mdm-miR396c; mdm-miR396d; mdm-miR396e; mes-miR396c; mes-miR396d; mes-miR396e; mes-miR396f; mtr-miR396a-5p; nta-miR396b; nta-miR396c; osa-miR396c-5p; pab-miR396g; pab-miR396h; ppe-miR396b; pta-miR396; ptc-miR396c; ptc-miR396d; ptc-miR396e-5p; rco-miR396; sbi-miR396c; sly-miR396b; stu-miR396-5p; tcc-miR396c; tcc-miR396e; zma-miR396e-5p; zma-miR396f-5p;

Bencao Homologs

Bjl-miR396a; Bsr-miR396b; aan-miR396c; aco-miR396a; apa-miR396c; apl-miR396b; asc-miR396b; ave-miR396c; bca-miR396b; bmj-miR396b; bpi-miR396b; car-miR396b; cas-miR396b; cci-miR396b; cco-miR396b; ccs-miR396b; cde-miR396a; cfe-miR396b; cit-miR396a; cja-miR396b; cmd-miR396b; cmi-miR396c; cmj-miR396b; cmo-miR396c; cof-miR396b; cor-miR396a; csp-miR396a; csu-miR396a; dst-miR396b; ehu-miR396b; eja-miR396b; epr-miR396b; esn-miR396a; est-miR396b; fsu-miR396c; gbi-miR396b; gel-miR396a; gja-miR396b; gpe-miR396c; gsi-miR396b; hcr-miR396c; hmu-miR396b; ili-miR396c; lcr-miR396b; lfo-miR396b; lgr-miR396a; ljn-miR396c; ljp-miR396b; llc-miR396b; llu-miR396a; mal-miR396c; mca-miR396b; nja-miR396b; nnu-miR396c; nte-miR396b; pav-miR396b; pcl-miR396b; pcn-miR396b; pfr-miR396b; poe-miR396a; por-miR396b; psu-miR396b; pvl-miR396c; rch-miR396b; rcr-miR396c; rja-miR396b; sad-miR396a; sar-miR396b; sba-miR396c; sbc-miR396c; sch-miR396b; sdi-miR396b; smi-miR396c; sor-miR396a; ssa-miR396b; ssu-miR396b; sto-miR396b; tci-miR396b; tmo-miR396c; vof-miR396b; vph-miR396b;

Rfam Alignments

>> MIR396  microRNA MIR396
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0069   19.7   0.0  cm       11       31 ~~           1          21 + ~~ 1.00 5'&3' 0.38
                                                                   ??? ?????? ???? ???       NC
                                                           ~~~~~~--<<<-<<<<<<-<<<<-<<<~~~~~~ CS
                                                 MIR396  1 <[10]*UUCCACgGCUUUCUUGAACUg*[87]> 118
                                                                 UUCCAC GCUUUCUUGAACU
                                            vph-miR396b  1 <[ 0]*UUCCACAGCUUUCUUGAACUU*[ 0]> 21
                                                           ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001004464 ;   NM_001098398 ;   NM_001098721 ;   NM_001098722 ;   NM_001142929 ;   NM_001142933 ;   NM_001142934 ;   NM_001198542 ;   NM_001198543 ;   NM_001270 ;   NM_001270974 ;   NM_001347701 ;   NM_001347702 ;   NM_001349741 ;   NM_001349742 ;   NM_001349744 ;   NM_001349745 ;   NM_001364113 ;   NM_004371 ;   NM_004405 ;   NM_004485 ;   NM_007118 ;   NM_015114 ;   NM_017558 ;   NM_017905 ;   NM_020549 ;   NM_020984 ;   NM_020985 ;   NM_020986 ;   NM_022739 ;   NM_033071 ;   NM_152726 ;   NM_182961 ;   NM_198976 ;   NM_199131 ;   NR_003082 ;   NR_040013 ;   NR_073430 ;   NR_134469 ;   NR_134515 ;   NR_146221 ;   NR_146222 ;   NR_157078 ;   NR_157079 ;  

Predicted by TAPIR

NM_001001556 ;   NM_001009609 ;   NM_001009616 ;   NM_001013626 ;   NM_001042459 ;   NM_001142929 ;   NM_001142933 ;   NM_001142934 ;   NM_001198542 ;   NM_001198543 ;   NM_001198801 ;   NM_001198802 ;   NM_001270974 ;   NM_001286230 ;   NM_001287491 ;   NM_001289030 ;   NM_001301210 ;   NM_001321226 ;   NM_001321231 ;   NM_001347701 ;   NM_001347702 ;   NM_001364910 ;   NM_001364911 ;   NM_001364912 ;   NM_001366022 ;   NM_002044 ;   NM_002568 ;   NM_003760 ;   NM_015114 ;   NM_016132 ;   NM_016448 ;   NM_017558 ;   NM_020549 ;   NM_020984 ;   NM_020985 ;   NM_020986 ;   NM_022739 ;   NM_030940 ;   NM_033071 ;   NM_182909 ;   NM_182961 ;   NM_198976 ;   NM_199131 ;   NR_002826 ;   NR_040013 ;   NR_073430 ;   NR_147895 ;