The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR396
  5. apl-miR396a

Accession: B07547870

Entry

ID: apl-miR396a
Alias: F5.L000063.A3D
Sequence: UUCCACAGCUUUCUUGAACUG
Description: MIR396 putative
Species: 龙牙草  Species latin name: Agrimonia pilosa
TCM Name: Xianhecao(仙鹤草)  
TCM Resource (Sample number): 仙鹤草(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aau-miR396; aly-miR396a-5p; amg-miR396; aof-miR396b; aqc-miR396a; ata-miR396e-5p; ath-miR396a-5p; bcy-miR396a; bdi-miR396c-5p; bdi-miR396d-5p; bgy-miR396a; cas-miR396a; cme-miR396b; cpa-miR396; csi-miR396a-5p; csi-miR396b-5p; dpr-miR396; eun-miR396b-5p; fve-miR396a-5p; fve-miR396c-5p; fve-miR396d; ghr-miR396a; ghr-miR396b; gma-miR396a-5p; gma-miR396i-5p; hbr-miR396b; lja-miR396; lus-miR396a; lus-miR396c; mdm-miR396b; mes-miR396a; mes-miR396b; mtr-miR396b-5p; nta-miR396a; osa-miR396a-5p; osa-miR396b-5p; ptc-miR396a; ptc-miR396b; sbi-miR396a; sbi-miR396b; sly-miR396a-5p; sof-miR396; ssl-miR396; ssp-miR396; tcc-miR396a; tcc-miR396b; vvi-miR396c; vvi-miR396d; zma-miR396a-5p; zma-miR396b-5p;

Bencao Homologs

Bsr-miR396a; aan-miR396b; acn-miR396a; act-miR396a; ade-miR396a; aeu-miR396a; ala-miR396a; apa-miR396b; apl-miR396a; asc-miR396a; ath-miR396; ave-miR396b; bca-miR396a; bja-miR396a; bmj-miR396a; bpi-miR396a; car-miR396a; cas-miR396a; cci-miR396a; cco-miR396a; ccs-miR396a; cfe-miR396a; cid-miR396a; cja-miR396a; cmd-miR396a; cmi-miR396b; cmj-miR396a; cmo-miR396b; cof-miR396a; cpe-miR396a; cso-miR396a; dst-miR396a; efo-miR396; ehu-miR396a; eja-miR396a; epr-miR396a; esc-miR396a; est-miR396a; fsu-miR396b; gbi-miR396a; gja-miR396a; gma-miR396a; gmc-miR396a; gpe-miR396b; gsi-miR396a; gur-miR396a; hcr-miR396b; hmu-miR396a; hoc-miR396a; hof-miR396a; iba-miR396a; ija-miR396a; ili-miR396b; lcr-miR396a; lfo-miR396a; lji-miR396a; ljn-miR396b; ljo-miR396a; ljp-miR396a; llc-miR396a; lln-miR396a; mal-miR396b; mca-miR396a; mch-miR396a; mpu-miR396a; nca-miR396a; nja-miR396a; nnu-miR396b; nsc-miR396a; nte-miR396a; pas-miR396b; pav-miR396a; pca-miR396a; pcl-miR396a; pcn-miR396a; pfr-miR396a; pla-miR396a; pmu-miR396a; por-miR396a; ppr-miR396a; psu-miR396a; pvl-miR396b; rcd-miR396a; rch-miR396a; rcr-miR396b; rja-miR396a; sar-miR396a; sba-miR396b; sbc-miR396b; sch-miR396a; sdf-miR396a; sdi-miR396a; sgl-miR396a; sjp-miR396a; sln-miR396a; smi-miR396b; spo-miR396a; ssa-miR396a; sse-miR396a; ssu-miR396a; sto-miR396a; tci-miR396a; tja-miR396a; tmo-miR396b; twi-miR396a; vof-miR396a; vph-miR396a; zof-miR396;

Rfam Alignments

>> MIR396  microRNA MIR396
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0044   20.4   0.0  cm       11       31 ~~           1          21 + ~~ 1.00 5'&3' 0.43
                                                                   ??? ?????? ???? ???       NC
                                                           ~~~~~~--<<<-<<<<<<-<<<<-<<<~~~~~~ CS
                                                 MIR396  1 <[10]*UUCCACgGCUUUCUUGAACUg*[87]> 118
                                                                 UUCCAC GCUUUCUUGAACUG
                                             zof-miR396  1 <[ 0]*UUCCACAGCUUUCUUGAACUG*[ 0]> 21
                                                           ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001080475 ;   NM_001098721 ;   NM_001098722 ;   NM_001184976 ;   NM_001270 ;   NM_001286229 ;   NM_001286230 ;   NM_001303447 ;   NM_001324423 ;   NM_001347701 ;   NM_001347702 ;   NM_001364113 ;   NM_004485 ;   NM_004664 ;   NM_005337 ;   NM_005502 ;   NM_006948 ;   NM_016448 ;   NM_022739 ;   NM_032431 ;   NM_033071 ;   NM_172230 ;   NM_182961 ;   NM_198976 ;   NR_040013 ;   NR_073177 ;   NR_134515 ;   NR_136887 ;   NR_136888 ;   NR_157078 ;   NR_157079 ;  

Predicted by TAPIR

NM_001001556 ;   NM_001004308 ;   NM_001142929 ;   NM_001142933 ;   NM_001142934 ;   NM_001170690 ;   NM_001184976 ;   NM_001289030 ;   NM_001323374 ;   NM_001323375 ;   NM_001323376 ;   NM_001323377 ;   NM_001330199 ;   NM_001347701 ;   NM_001347702 ;   NM_001367977 ;   NM_001744 ;   NM_002044 ;   NM_005337 ;   NM_005502 ;   NM_006948 ;   NM_015114 ;   NM_020549 ;   NM_020974 ;   NM_020984 ;   NM_020985 ;   NM_020986 ;   NM_022739 ;   NM_033071 ;   NM_182961 ;   NM_198976 ;   NR_040013 ;   NR_073177 ;   NR_147895 ;   NR_161291 ;   NR_161292 ;