The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR168
  5. apa-miR168a

Accession: B07246941

Entry

ID: apa-miR168a
Alias: F56.L000072.A3D
Sequence: UCGCUUGGUGCAGGUCGGGAA
Description: MIR168 putative
Species: 穿心莲  Species latin name: Andrographis paniculata
TCM Name: Chuanxinlian(穿心莲)  
TCM Resource (Sample number): 穿心莲(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR168a-5p; aly-miR168b-5p; aof-miR168a; ath-miR168a-5p; ath-miR168b-5p; atr-miR168; bna-miR168a; bra-miR168a-5p; cca-miR168a; ccl-miR168; crt-miR168; csi-miR168-5p; fve-miR168-5p; gma-miR168a; lus-miR168a; lus-miR168b; mdm-miR168a; mdm-miR168b; mes-miR168a; mtr-miR168b; mtr-miR168c-5p; nta-miR168d; nta-miR168e; pab-miR168a; ppe-miR168; ptc-miR168a-5p; ptc-miR168b-5p; rco-miR168; tcc-miR168; vca-miR168a-5p; vca-miR168b-5p; vun-miR168; vvi-miR168;

Bencao Homologs

Bjl-miR168a; aan-miR168a; aha-miR168a; apa-miR168a; ave-miR168a; bca-miR168a; bhi-miR168a; bpi-miR168a; cco-miR168a; ccs-miR168a; cit-miR168a; cja-miR168a; cmd-miR168a; cmi-miR168a; cmo-miR168a; cof-miR168a; csp-miR168a; epr-miR168a; est-miR168a; fmu-miR168; fsu-miR168a; gpe-miR168a; gsi-miR168a; hcr-miR168a; ili-miR168a; lcr-miR168a; lfo-miR168a; mpu-miR168a; nnu-miR168a; pfr-miR168a; pvl-miR168a; rcr-miR168a; rja-miR168a; sba-miR168a; sbc-miR168a; sch-miR168a; sdi-miR168a; smi-miR168a; sto-miR168a; tmo-miR168a;

Rfam Alignments

>> MIR168  microRNA MIR168
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00043   20.6   0.0  cm       19       39 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                                                                 ??  ?????????? ?????        NC
                                                           ~~~~~~<<--<<<<<<<<<<-<<<<<-~~~~~~ CS
                                                 MIR168  1 <[18]*UCGCUUGGUGCAGGUCGGGAA*[94]> 133
                                                                 UCGCUUGGUGCAGGUCGGGAA
                                            tmo-miR168a  1 <[ 0]*UCGCUUGGUGCAGGUCGGGAA*[ 0]> 21
                                                           ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001116 ;   NM_145166 ;  

Predicted by TAPIR

NM_001116 ;