The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR167
  5. aha-miR167a

Accession: B04740059

Entry

ID: aha-miR167a
Alias: F4.L000175.A3D*
Sequence: UGAAGCUGCCAGCAUGAUCUG
Description: MIR167 putative
Species: 海南山姜  Species latin name: Alpinia hainanensis
TCM Name: Caodoukou(草豆蔻)  
TCM Resource (Sample number): 草豆蔻(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aof-miR167c; atr-miR167; cme-miR167d; cme-miR167f; csi-miR167a-5p; csi-miR167c-5p; dpr-miR167c; gma-miR167c; gma-miR167j; gso-miR167a; lja-miR167; lus-miR167f; lus-miR167g; lus-miR167i; mes-miR167a; mtr-miR167b-5p; osa-miR167d-5p; osa-miR167e-5p; osa-miR167f; osa-miR167g; osa-miR167h-5p; osa-miR167i-5p; osa-miR167j; ptc-miR167e; sbi-miR167c; sbi-miR167d; sbi-miR167e; sbi-miR167f; sbi-miR167g; sbi-miR167h; sof-miR167a; sof-miR167b; ssp-miR167b; vvi-miR167a; zma-miR167e-5p; zma-miR167f-5p; zma-miR167g-5p; zma-miR167h-5p; zma-miR167i-5p; zma-miR167j-5p;

Bencao Homologs

Bjl-miR167b; acn-miR167; acr-miR167; aha-miR167a; apl-miR167d; ave-miR167b; bhi-miR167; car-miR167; cco-miR167d; ccs-miR167a; cfe-miR167; cit-miR167a; cso-miR167; csp-miR167b; dst-miR167d; efo-miR167a; ehu-miR167b; eja-miR167b; epr-miR167b; est-miR167b; gbi-miR167b; gja-miR167a; gma-miR167a; gsi-miR167a; hcr-miR167b; hmu-miR167a; hof-miR167; llc-miR167a; lpu-miR167c; mal-miR167; mca-miR167c; mch-miR167a; nnu-miR167b; nte-miR167a; pcn-miR167c; pfr-miR167b; pmu-miR167a; poe-miR167c; por-miR167d; pvl-miR167c; rch-miR167b; rcr-miR167a; sar-miR167; sch-miR167b; sdi-miR167b; sgl-miR167a; smi-miR167c; sor-miR167a; sto-miR167b; tch-miR167; tci-miR167c; tmo-miR167b; vof-miR167a; vum-miR167c; zmu-miR167a;

Rfam Alignments

>> MIR167_1  microRNA MIR167_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   8.2e-05   24.5   0.0  cm       14       34 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                                            ??? ?????  ??????????       NC
                                                      ~~~~~~<<<-<<<<<--<<<<<<<<<<~~~~~~ CS
                                          MIR167_1  1 <[13]*UGAAGCUGCCAGCAUGAuCUg*[96]> 130
                                                            UGAAGCUGCCAGCAUGAUCUG
                                       zmu-miR167a  1 <[ 0]*UGAAGCUGCCAGCAUGAUCUG*[ 0]> 21
                                                      ......*********************...... PP

Targets

Predicted by TargetFinder

NM_000071 ;   NM_000236 ;   NM_001005751 ;   NM_001024843 ;   NM_001159770 ;   NM_001162501 ;   NM_001178008 ;   NM_001178009 ;   NM_001197244 ;   NM_001291398 ;   NM_001300754 ;   NM_001300756 ;   NM_001301061 ;   NM_001307960 ;   NM_001308026 ;   NM_001320100 ;   NM_001320298 ;   NM_001321072 ;   NM_001321073 ;   NM_001330102 ;   NM_001352691 ;   NM_001352692 ;   NM_001352693 ;   NM_001354006 ;   NM_001354007 ;   NM_001354008 ;   NM_001354009 ;   NM_001354010 ;   NM_001354012 ;   NM_001354014 ;   NM_001354015 ;   NM_001370199 ;   NM_001370200 ;   NM_001370201 ;   NM_001370202 ;   NM_001370203 ;   NM_001370204 ;   NM_001370205 ;   NM_001370206 ;   NM_001370207 ;   NM_001370528 ;   NM_001707 ;   NM_015088 ;   NM_021035 ;   NM_025141 ;   NM_078474 ;   NM_139177 ;   NM_172364 ;   NM_178833 ;   NM_182557 ;   NM_198859 ;   NR_026552 ;   NR_036682 ;   NR_040066 ;   NR_040067 ;   NR_040068 ;   NR_040069 ;   NR_040070 ;   NR_120673 ;   NR_121624 ;   NR_135147 ;   NR_136885 ;   NR_148682 ;  

Predicted by TAPIR

NM_000236 ;   NM_000888 ;   NM_001005751 ;   NM_001024845 ;   NM_001033518 ;   NM_001040110 ;   NM_001109977 ;   NM_001159770 ;   NM_001165412 ;   NM_001166017 ;   NM_001197244 ;   NM_001261380 ;   NM_001282353 ;   NM_001282354 ;   NM_001282355 ;   NM_001282388 ;   NM_001282389 ;   NM_001282390 ;   NM_001291398 ;   NM_001293163 ;   NM_001293164 ;   NM_001301061 ;   NM_001307960 ;   NM_001308026 ;   NM_001319226 ;   NM_001321072 ;   NM_001321073 ;   NM_001321981 ;   NM_001328626 ;   NM_001328627 ;   NM_001328628 ;   NM_001328629 ;   NM_001328630 ;   NM_001330102 ;   NM_001330332 ;   NM_001346743 ;   NM_001346744 ;   NM_001348694 ;   NM_001352691 ;   NM_001352692 ;   NM_001352693 ;   NM_001354006 ;   NM_001354007 ;   NM_001354008 ;   NM_001354009 ;   NM_001354010 ;   NM_001354012 ;   NM_001354014 ;   NM_001354015 ;   NM_001364170 ;   NM_001367493 ;   NM_001370528 ;   NM_001707 ;   NM_003998 ;   NM_005011 ;   NM_006934 ;   NM_015320 ;   NM_020880 ;   NM_021035 ;   NM_025141 ;   NM_033315 ;   NM_078474 ;   NM_139177 ;   NM_145061 ;   NM_175709 ;   NM_198859 ;   NM_201649 ;   NR_015406 ;   NR_036682 ;   NR_048548 ;   NR_120673 ;   NR_121624 ;   NR_136885 ;   NR_148682 ;