The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. aha-miR319a

Accession: B04745305

Entry

ID: aha-miR319a
Alias: F30.L000018.B3D
Sequence: UUGGACUGAAGGGAGCUCCCU
Description: MIR319 putative
Species: 海南山姜  Species latin name: Alpinia hainanensis
TCM Name: Caodoukou(草豆蔻)  
TCM Resource (Sample number): 草豆蔻(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Yes

Homologs

miRBase Homologs

aau-miR319; aly-miR319a-3p; aly-miR319b-3p; amg-miR319; aof-miR319a; aqc-miR319; ath-miR319a; ath-miR319b; bra-miR319-3p; cca-miR319; gma-miR319h; gma-miR319j; gma-miR319k; gma-miR319m; hbr-miR319; lus-miR319a; mdm-miR319a; mdm-miR319b-3p; mes-miR319a; mes-miR319b; mes-miR319c; mes-miR319d; mes-miR319e; mtr-miR319d-3p; nta-miR319a; nta-miR319b; rco-miR319a; rco-miR319b; rco-miR319c; sly-miR319b; stu-miR319a-3p; tae-miR319; vun-miR319a; vvi-miR319b; vvi-miR319c; vvi-miR319f;

Bencao Homologs

Bjl-miR319; aan-miR319a; aha-miR319a; ala-miR319a; aof-miR319a; apa-miR319a; apl-miR319a; bca-miR319a; bch-miR319a; bhi-miR319a; bmj-miR319a; bpi-miR319a; cco-miR319a; ccs-miR319a; cmd-miR319a; cmo-miR319a; cof-miR319a; cor-miR319; csm-miR319a; dst-miR319a; ehu-miR319a; epr-miR319a; est-miR319a; fmu-miR319a; fsu-miR319a; gja-miR319a; gma-miR319a; gmc-miR319a; gpe-miR319a; hcr-miR319a; hof-miR319a; ija-miR319a; ili-miR319a; ljn-miR319a; ljo-miR319; lln-miR319a; mca-miR319a; nnu-miR319a; pas-miR319a; pav-miR319a; pcl-miR319a; pfr-miR319a; poe-miR319; por-miR319a; psu-miR319a; pvl-miR319a; rch-miR319a; rcr-miR319a; rja-miR319a; sad-miR319a; sba-miR319a; sbc-miR319a; sch-miR319a; sdf-miR319; sdi-miR319a; sgl-miR319a; smi-miR319a; spo-miR319; ssa-miR319; sse-miR319a; ssu-miR319a; sto-miR319a; tmo-miR319a; twi-miR319a; vof-miR319a; zof-miR319a;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0009   20.3   0.0  cm      165      185 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                                                                  ???????  ????????          NC
                                                          ~~~~~~~->>>>>>>-->>>>>>>>:::~~~~~~ CS
                                               MIR159   1 <[164]*UUGGAcuGAAGGGAGCUCCuu*[11]> 196
                                                                 UUGGACUGAAGGGAGCUCC+U
                                          zof-miR319a   1 <[  0]*UUGGACUGAAGGGAGCUCCCU*[ 0]> 21
                                                          .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001171740 ;   NM_001171741 ;   NM_003076 ;   NM_014906 ;   NM_015603 ;   NM_016210 ;   NM_022781 ;   NM_139071 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_048561 ;  

Predicted by TAPIR

NM_001171740 ;   NM_001171741 ;   NM_003076 ;   NM_016210 ;   NM_022781 ;   NM_139071 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;